The obvious mods are not here, like all the mods that you are able to place in those towns and cities which are listed as free areas to mod in my main description for the full version.


Antennaria 
Place above TPOS2 in your load order.

YASH - Yet Another Skyrim Hardcore mod 
Place above TPOS2 in your load order.

LC_Build Your Noble House
Place below TPOS2 in your LO

Trade and Barter
Place above TPOS2 in your load order.

Archery Gameplay Overhaul SE
Place above TPOS2 in your load order.

The Fall of Granite Hill
Place after TPOS2 in your load order.

Heljarchen Farm - Skyrim Special Edition (Revamped)
Heljarchen Farm  load after TPOS2

Bathing Beauties or Beefcake - Luxury Suite SE

Legacy Of The Dragonborn
Is an esm file so will be above TPOS 2

Riverside Lodge
Load above TPOS2 in your load order.

Skyrim 3D Trees and Plants
Load above TPOS2 in your load order.

Populated Cities Towns Villages SE Edition
Load above TPOS2 in your load order.

The Forgotten City
Load above TPOS2 in your load order. The same for all esp quest mods in general.

Missives
Load above TPOS2 in your load order.

Morrowloot Special Edition
Load above TPOS2 in your load order.

Wintersun - Faiths of Skyrim
Load above TPOS2 in your load order.

Man Those Borders SSE
Load above TPOS2 in your load order.

Winterhold Restored
Load above TPOS2 in your load order.

Magical College of Winterhold
Place above TPOS2

Penitus Oculatus
Load Above TPOS

Immersive Laundry
Load Above TPOS2 Main File 1

VHR - Vanilla Hair Replacer 
Provides a patch for the black face bug between the two mods.

Outlaws Refuges  
Outlaws & Refuges Version 1.2 requires cleaning in xEdit 4.0.2  date tested: 30/5/2019 Error check required and Oldrim water fix required. 1 Navmesh.
Load Above TPOS2 Main File 1 

Skyrim Sewers 4
Load Above TPOS2 Main File 1 in your load order

OBIS SE - Organized Bandits In Skyrim Special Edition
Load Above TPOS2 Main File 1 in your load order

Alternate Start - Live Another Life
Is compatible with alternate start... 
Load Above TPOS 2 in your load order

Skyrim Battle Aftermath SE
Load Above TPOS2 Main File 1 in your load order

The Notice Board SE
Load below TPOS2 Main File 1 in your load order

Helgen Reborn
Load Above TPOS2 Main File 1 in your load order

Qaxe's Winterhold Rebuild for SSE
Patch in the download area, follow load order advice.

Oakwood
Load after TPOS2 Main File 1 in your load order

Helarchen Creek
Load after TPOS2 Main File 1 in your load order
 
Immersive Encounters
Load Above TPOS2 Main File 1 in your load order

More interesting loot reborn
Load Above TPOS2 Main File 1 in your load order


SANDS OF TIME ( DEADLY ENCOUNTERS ) 
Early testing seems good and xedit doesn't show anything of note. Testing when completed will be reported here.

Load Order 
tpos_complete02_RTCWG ( Full Version Standard Main File Or TPOS Open Cities Full File Version )
Sands Of Time Mod

Genesis Surface Spawns - Encounters
Load Above TPOS2 Main File 1 in your load order

Thunderchild - Epic Shouts and Immersion
Load Above TPOS2 Main File 1 in your load order...still under full evaluation, however,  in xEdit I can see nothing in terms of references of conflict. Report any conflicts please, but be sure of your results.

Other Mods which can be used...
Load Above TPOS2 in your load order

Realistic Needs or Immersive Needs
Wildcat
Vigor
True Unleveled Skyrim.
Archery Gameplay Overhaul.