Beantown Interiors. No. Unfortunately it renders Hyde Park unplayable. If you really can't live without BI, and I understand how you feel, as I'm still looking for those gnomes too, your only option is the version of this mod with broken precombines. Additional notes if you take this route:

• Make sure my mod is below the BT Optimization patch in the load order.
• BI adds 5 interiors to Jamaica Plain. After taking control of the workbench, manually "open" each by scrapping the boarded-up building (be sure the game says "Boarded House" or "Brick Building"; otherwise you're scrapping the wrong house, which will be a disaster.)
• BI adds trash and brick piles on the outside of some buildings, these are not automatically scrapped by my mod. You'll need a scrapping mod or the console to get rid of these.
• Objects snap to most, but not all of BI's floors. I have no control over this.
  

Jamaica Overland Express: Yes.

• There's an enemy in the interior cell marked as a boss for the location so you'll need to kill it prior to gaining access to the workbench.
• The manhole cover entrance sticks up a bit with the asphalt removed but with Place Everywhere you can move it and it'll snap down to the ground or sidewalk.
• If you're truly a control freak you can also scrap the boarded house and the extras attached to it, then move the door to where you like so you can retain access to the interior.
  

Revived Settlements - Jamaica Plain: Yes.

• This mod places a bathroom where all my scrapping additions are placed, but all items are accessible. Since my items are meant to be scrapped anyway (the shelves can go too), it's no big deal.
• You'll want to scrap the vanilla brick building on the north side of the parking lot, which clobbers the player home's north entrance and balcony patio. Just point up and look for "Brick Building" while in workshop mode.
• A few brick walls will remain visibly in the way of things, although all doors and gates still work.
• A trash bin is co-located with my weapons workbench, but you can move either item to a new spot.
• Although the mod author strongly advises installing the mod after clearing the ghouls, I did not have any issues after 4 attempts. If you encounter the glitch where a ghoul remains in an inaccessible spot, open the console and enter "kah" which should kill it.
• Some of the navmesh that I marked "preferred" goes right through some fences. You might have to scrap some of these if your settlers are stuck.
  

Rebuilt Jamaica Plain: Yes.

• This otherwise striking mod has 454 deleted references, 26 ITMs, and 7 deleted navmeshes. Due to the navmesh deletions which are not easily fixed in xEdit, you really must load my mod after this one to avoid crashes. But then you lose the ability of settlers finding any beds you put in the replacement house. In a test where every bed was inside the new house, the settlers just stood still in other places all night. (Maybe this is good for players who want a settler-free player home?)
• If you do plan to use this mod, perform the quick-auto clean in xEdit first, otherwise you'll have an unwelcome side effect: after you use my quick-scrap feature, then quit the game, then reload the game, all those deleted references (mostly trash piles and decals) will re-appear. Some of those items can be re-scrapped (individually this time) but some items will need to be removed using the console.
  

Jamaica Plain Interior Home: Yes.

• Place my mod lower in the load order.
• Changes made near the workbench partially clobber the objects I added, but my stuff was meant to be scrapped so it's no big deal.
• The vanilla boarded-up house will still be there, just scrap it to gain access to the new house (be sure the game says "Boarded House" when you look at it).
• In the restored brick building that has the workbench, the glimmer in the floors and walls can be fixed with the console: Use "modpos z 0.01" for each glimmering floor piece, and "modpos x 0.01; modpos y 0.01" for each glimmering wall. With such a small adjustment you won't notice any difference except that the glimmer is gone.
  

Space Raiders: Yes.

• Place my mod lower in the load order.
• Due to my terrain changes, there are some minor terrain discontinuities near their building.
• You'll be able to scrap most of their additions including the door to the interior cell, so you might want to play through the mod before scrapping. Lots of goodies in there. On the outside there's a Vault-Tec Reactor that produces 150 power...as Codsworth would say, "Well they certainly won't be needing that any more."
  

Scrap Everything. Yes, but know that if SE is loaded last, as recommended in its description, it will break precombines in 5 of the 9 cells here. So you're trading performance for all those magnificent scrap recipes, so maybe it all evens out? Personally I'd run around and scrap everything manually just for the extra materials, then scrap my toys near the workbench.

The Machine and Her. Yes. I had no issues with the WWOZ Radio building nearby. In my test I had my mod lower in the load order.

Sim Settlements. Yes. Tested with IDEK's Logistics Station which upgraded itself eventually to a level 3 tower. Also I ran a brief test with Kinggath's base city plan for Rise of the Commonwealth which looked surprisingly good, with just a few items hovering where a brick pile used to be. Other city plans will vary of course. Keep in mind that all city plans will restrict themselves to the original build area, leaving most of the town available for you to do what you want.

I don't recommend doubling up on expansion mods for the same settlement, but I did test a couple in case anyone should ask: All Settlements Extended and Jamaica Plain: Rise of New City: If my mod is lower in the load order, the build area is the combined build area of both mods, though the other mod's border is the one always shown. The quick-clean feature works and you get my smoother terrain, so I guess it's ok?