In the description, it says: By default, installs mods to the game's "Doom3/base" folder (this is where .pak files should go). If your mod needs to go in a different folder, simply set the mod type as "Binaries / Root Game Folder" and manually set up the folder structure you need from the root game folder.I need the mod to install to the root of Doom3.
Never mind, I found it. For anyone else, after installing the mod using Vortex, go to the Mods page and double click the name of the mod. Near the bottom of the page that opens is "Mod Type".
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Where do I "set the mod type"?
Thanks for the Doom 3 extension o/