Slightly, yes, just enough to keep things consistent (i.e. removed references to "Jake Armitage," that sort of thing. This does not alter the storyline in any significant way--it just let's you play the main campaign AS Armitage. Nothing less, nothing more. Also allows you to import him into other mods, if there's an import feature, of course.
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For one, how does this affect the storyline? Did you change any of the dialogue?