The problem is the items are flagged quest and the quest script itself never ends. I recently decided to fix this on my play through and ended up editing DN015 & DN015Puzzle so that the script cleanly terminates when appropriate. Know this is old but was looking through the bugfix section and saw this and felt like mentioning it.
Thanks. The game actually has a built-in way to remove the extra components from your inventory, you can sort of glitch the component machine into taking more than one sample at a time. This is just way easier.
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Know this is old but was looking through the bugfix section and saw this and felt like mentioning it.
Nice one...
I'm tracking him now :D