If we use this mod and never pick up the in-game pyramids, just use the ones from this mod all the way through, would there be any negative consequences? Or, asked a little differently, would you anticipate negative consequences to be likely?
Sorry for the late reply, no they won't let you travel back to a world map you left. I wish I could make a mod that did that! Game really needs a new game plus mode, with scaled up enemies, and random encounters.
I find it best just to drop the modded pyramids on the beach right before you board the Lady Vengeance. They will not work when you are around the standard pyramids, however they will start working again after Reapers Coast if you didn't find them there.
Sorry this mod only adds them to Fort Joy. You will have to find the normal pyramids in game. This video should help you find them. https://www.youtube.com/watch?v=N7G9YKvODvs
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https://www.youtube.com/watch?v=N7G9YKvODvs