Version of mod is (beta) because I have only tested in my desktop.
This mod I did for myself and post it here for somebody may want the same thing.
To manually install: just unzip the file into your "<main game directory>\mods\" folder.
To manually uninstall: just delete the "modRemoveUpgradeSaveRunes" folder inside your "<main game directory>\mods" folder.
Note: This mod will conflict with any mod modifying "scripts\game\gui\menus\blacksmithMenu.ws" file (you can using WitcherScriptMerger to fix).