Cleaning Sanctuary can take an hour or more and using the console command to scrapall is just so much easier. Downside is that it scraps your crafting stations. This BAT file adds them all back at the point you are standing. Its just a convenience BAT file that can be used at any crafting location.
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Drop the BAT file into your Fallout 4 folder and you are done.
In game stand where you would like them all to be dropped and in the console simply type "bat craftstations". Each of the 5 starting crafting stations will be dropped at your feet. Once in crafting mode you can move them to your desired location.
The bat file will drop
1. armor station 2. weapon station 3. chem station 4. cooking station 5. power armor station
It's the stations that are already present when you arrive at Sanctuary.