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I thought it was silly that a command ship had all that hit points and no weapons to back it up. I also found it unrealistic that by just adding a command ship it magically adds hp across the fleet.I found it more realistic that a ship would buff in other ways such as below.

 1) So what I did is nerf the hp for the basic command ship only (and removed hp fleet buff)but gave it 15% base defense (with fleet buff) to all weps,an additional 2% per lvl and 1 hp per LVL instead of the vanilla 1%. The command ship now also has a 1 beam attack, which I thought was reasonable especaially if you useother mods that will boost it (somthing like sexy anomoly mod).

2) I also did'nt care for the Martyr upgrade so I completely changed it to the "Peacekeeper".This is a Command Carrier which features 4 assault fighters / jamming, and a couple other features.I tried not to make it op so feedback is welcome.